Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs35291443 chr10:29327718 C/A 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs35402345 chr11:123528121 A/G 4.12E-5 502 31.92 28.28 24.67 KM Plot
THCA rs35437846 chr2:87021105 G/A 6.85E-8 499 32.6 28.43 32.1 KM Plot
THCA rs35459735 chr10:29327798 T/C 2.68E-9 501 31.8 30.13 29.28 KM Plot
THCA rs35593316 chr8:8360740 TTGTC/T 1.66E-7 482 33.5 30.22 22.83 KM Plot
THCA rs35594332 chr2:86982651 G/A 6.61E-10 501 32.35 27.27 20.92 KM Plot
THCA rs35626322 chr2:87030421 A/T 5.76E-6 502 32.43 29.17 32.1 KM Plot
THCA rs35662836 chr7:43951162 G/A 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs35686780 chr1:152898182 T/A 0.000131 502 31.45 34.42 37.7 KM Plot
THCA rs35700471 chr11:123527648 C/T 2.88E-5 497 31.87 28.85 26.73 KM Plot
THCA rs35706509 chr2:87024877 CTT/C 5.89E-8 503 32.77 28.23 32.1 KM Plot
THCA rs35719150 chr7:16480952 GCTGA/G 4.04E-5 483 31.37 32.15 33.48 KM Plot
THCA rs35723887 chr2:87021043 T/C 6.85E-8 499 32.6 28.43 32.1 KM Plot
THCA rs35738590 chr1:152909721 T/G 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs35739120 chr2:87021165 T/C 6.85E-8 499 32.6 28.43 32.1 KM Plot